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Overview of Viral Enteritis in Poultry

Reviewed/Revised Oct 2024

Numerous viruses are associated with enteric diseases of poultry. Enteric diseases in poultry are among the most difficult to diagnose due to the similarity of clinical signs and gross lesions observed among the diverse group of pathogens associated with diseases. Diagnosis also can be difficult due to confounding issues, such as the presence of viruses in healthy birds, variable pathogenicity and age-related resistance, and coinfection by multiple viruses and other nonviral pathogens. The economic impact of enteric diseases is substantial and results in financial losses due to decreased production and increased costs of getting birds to market.

Pearls & Pitfalls

  • Diagnosis can be difficult due to confounding issues, such as the presence of viruses in healthy birds, variable pathogenicity and age-related resistance, and coinfection by multiple viruses and other nonviral pathogens.

Enteric viruses are often associated with complex syndromes, such as malabsorption syndrome of broiler chickens and poult enteritis mortality syndrome of turkey poults. Enteric viruses are also associated with nonenteric diseases, such as tenosynovitis caused by infection with avian orthoreoviruses.

Despite rapid advancements in the development of diagnostic testing technologies, limited diagnostic tests are available for the industry; most rely on detection of the viral genome's nucleic acid by PCR or RT-PCR assays. No serological or transmission electron microscopy tests are available in US avian diagnostic labs.

Metagenomic studies of complex enteric diseases affecting poultry have led to identification of prevalent virus families and include coronaviruses, rotaviruses, astroviruses, parvoviruses, and picornaviruses (1, 2, 3, 4).

References

  1. Day JM, Ballard LL, Duke MV, Scheffler BE, Zsak L. Metagenomic analysis of the turkey gut RNA virus community. Virol J. 2010;7:313. doi:10.1186/1743-422X-7-313

  2. Day JM, Oakley BB, Seal BS, Zsak L. Comparative analysis of the intestinal bacterial and RNA viral communities from sentinel birds placed on selected broiler chicken farms. PLoS One. 2015;10(1):e0117210. https://doi.org/10.1371/journal.pone.0117210

  3. Devaney R, Trudgett J, Trudgett A, Meharg C, Smyth V. A metagenomic comparison of endemic viruses from broiler chickens with runting-stunting syndrome and from normal birds. Avian Pathol. 2016;45(6):616-629. doi:10.1080/03079457.2016.1193123

  4. Kim T, Mundt E. Metagenomic analysis of intestinal microbiomes in chickens. In: Kwon YM, Ricke SC, eds. High-Throughput Next Generation Sequencing: Methods and Applications. 2011; 185-194. Walker JM, ed. Methods in Molecular Biology, vol 733.

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